rs561117 chr6:125154918 G>A
- Sequence
aactctgtgttggctcttagtata[G/A]ataaaatctcattaaaaagaaaaa
- ASB in cell types
- K562 (myelogenous leukemia) GM18526 (B – cells Lymphoblastoid Cell Lines) breast tumor THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- ZBT40_HUMAN COT1_HUMAN REQU_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT40_HUMAN | n/a | 2.37 | 2.50 | n/a | n/a | |||
| COT1_HUMAN | 2.60 | n/a | 2.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.52 | -1.66 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.70 | 0.17 | 1.80 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.08 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood