rs56121712 chr2:119311098 T>C
- Sequence
atgtcacataacatttatttagaa[T/C]aaaaccacatgcacattctaggct
- ASB in cell types
- GM18486 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) GBM39 (Human brain tumor)
- ASB for transcription factors
- STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.05 | 1.37 | 1.07 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg