rs56140430 chr10:62046804 C>A
- Sequence
agttttattggccttagtgggagt[C/A]ttgccacctactgctgggtcaaga
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) GM18486 (Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.65 | 3.38 | 1.05 | 1.23 | Weak Concordant | |||
| STAG1_HUMAN | -0.49 | 2.04 | 1.00 | n/a | n/a |
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Motif analysis
