rs56253030 chr19:2951237 T>G
- Sequence
tttcaaattcgcggatattttgtt[T/G]tagttgctttagacataggtgtcc
- ASB in cell types
- foreskin keratinocyte 22RV1 (prostate carcinoma) CD34+ stem cells-derived erythroblasts GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ANDR_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -1.55 | 2.42 | 2.00 | -1.35 | Weak Discordant | |||
| STAG1_HUMAN | 0.08 | 0.77 | 1.00 | n/a | n/a |
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Motif analysis
