rs56266334 chr6:99521045 G>A
- Sequence
ggaggagaaggagtaggaggaagt[G/A]gtcactagcgcggcggccgccggc
- ASB in cell types
- CD14+ monocytes macrophages form periferal blood 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN SPI1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.41 | n/a | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 3.30 | n/a | 2.00 | -3.23 | Concordant | |||
| ANDR_HUMAN | 2.59 | -0.42 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood