rs56277800 chr1:16905243 T>G
- Sequence
tatggttatcaaagtggtttactg[T/G]aaggctgagggctatgcattctat
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) tibial nerve HepG2 (hepatoblastoma)
- ASB for transcription factors
- SPT5H_HUMAN CTCF_HUMAN IKZF1_HUMAN EP300_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 1.65 | n/a | 5.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.64 | -0.28 | 1.56 | n/a | No Hit | |||
| IKZF1_HUMAN | 3.16 | n/a | 3.67 | n/a | No Hit | |||
| EP300_HUMAN | 1.37 | -0.87 | 1.50 | n/a | n/a | |||
| RHG35_HUMAN | 2.57 | n/a | 4.00 | n/a | n/a |
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