rs56283881 chr19:893183 C>T
- Sequence
ccatcttcctcggtaacaaccagt[C/T]gcctgaggcgtggggccgcctccc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN ANDR_HUMAN BRD4_HUMAN BHE40_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.25 | 0.31 | 1.08 | n/a | No Hit | |||
| ANDR_HUMAN | 2.27 | -3.33 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.99 | 0.33 | 1.50 | n/a | n/a | |||
| BHE40_HUMAN | 1.73 | -1.49 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood