rs56290409 chr2:102595051 T>A
- Sequence
tcattactgcttacctacaaacaa[T/A]ttgtggaacactagtgttttagct
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.13 | 1.50 | 1.97 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.10 | 0.95 | 1.82 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Lung, Muscle_Skeletal, Testis, Thyroid, Whole_Blood