rs56337023 chr11:67277767 C>T
- Sequence
gggccctctttgtaagcaacctgc[C/T]tggtgttggccctccattcctcct
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) CD14+ monocytes Th1-cells breast tumor
- ASB for transcription factors
- SPI1_HUMAN TCF21_HUMAN STAT1_HUMAN MYB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -0.18 | 1.91 | 1.88 | n/a | No Hit | |||
| TCF21_HUMAN | n/a | 2.10 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | -0.09 | 2.49 | 1.33 | n/a | No Hit | |||
| MYB_HUMAN | n/a | 2.94 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | -1.54 | 2.49 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood