rs565599 chr6:31830816 G>C
- Sequence
tttttgtatttttggtagagacag[G/C]gttttaccgtgttagccaggatgg
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- PEX2_HUMAN IKZF1_HUMAN ELF1_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PEX2_HUMAN | 2.47 | -2.17 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | n/a | 2.75 | 3.00 | n/a | No Hit | |||
| ELF1_HUMAN | n/a | 2.02 | 3.00 | n/a | No Hit | |||
| NFIC_HUMAN | n/a | 2.15 | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.98 | -0.96 | 3.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood