rs56770788 chr1:9436422 C>T
- Sequence
cacagggaatctgtcataactctg[C/T]tgacatggcttcttatcatgcctg
- ASB in cell types
- LNCaP (prostate carcinoma) upper lobe of left lung primary prostate cancer
- ASB for transcription factors
- FOXA1_HUMAN EP300_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.27 | 1.38 | 1.51 | 4.39 | Concordant | |||
| EP300_HUMAN | -0.73 | 1.82 | 1.67 | n/a | n/a |
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Motif analysis
