rs56842618 chr6:34757143 T>C
- Sequence
cacggcgccggctcctgttggttt[T/C]agtatctgtcttgttccactagaa
- ASB in cell types
- neural cell 22RV1 (prostate carcinoma) primary B-CLL cells
- ASB for transcription factors
- ANDR_HUMAN MXI1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.34 | -4.93 | 2.00 | n/a | No Hit | |||
| MXI1_HUMAN | -2.93 | 3.24 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.72 | 0.48 | 2.06 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood