rs57018358 chr17:81513849 G>A
- Sequence
ttggttacaccccgagaggcgccc[G/A]gcactacggtttccttgtgcgctg
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- SNAI2_HUMAN ZIC2_HUMAN STAT1_HUMAN MGAP_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.86 | n/a | 1.50 | n/a | No Hit | |||
| ZIC2_HUMAN | n/a | 1.90 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.45 | -0.60 | 1.67 | n/a | No Hit | |||
| MGAP_HUMAN | n/a | 2.82 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Spleen, Thyroid