rs57029323 chr7:98433444 C>T
- Sequence
tactgttgctttcaggagatggca[C/T]caggtgtgtctcgacttgtacttg
- ASB in cell types
- SU-DHL-2 (anaplastic large cell lymphoma) THP-1 (acute monocytic leukemia) gastroesophageal sphincter glioblastoma cells
- ASB for transcription factors
- ITF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ITF2_HUMAN | 3.03 | n/a | 2.00 | -1.69 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial