rs5718 chr16:23182544 A>G

Sequence
ggcactgcgcggtggcccaggaag[A/G]cgcagcgcggccgggctggggcgc
ASB in cell types
HepG2 (hepatoblastoma) IMR-5 (Neuroblastoma) T47D (invasive ductal carcinoma) erythroid progenitors

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
HepG2 (hepatoblastoma) 1.15 0.25 2.1·10-61.00 2.85
IMR-5 (Neuroblastoma) 3.19 n/a 3.7·10-51.00 1.50
T47D (invasive ductal carcinoma) 0.65 1.03 1.006.8·10-5 2.06
erythroid progenitors n/a 2.25 1.007.9·10-3 2.00
KB (cervical adenocarcinoma) 1.19 -0.30 0.011.00 1.50
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Cerebellum

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