rs57254657 chr2:16183315 G>A
- Sequence
ttttaattttatggatgttataat[G/A]taaatatctagatggtagctcaat
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.90 | -0.73 | 2.58 | -1.87 | Weak Concordant | |||
| ANDR_HUMAN | 1.61 | -0.96 | 2.33 | n/a | No Hit | |||
| HXB13_HUMAN | 1.52 | -0.41 | 1.67 | n/a | No Hit |
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Motif analysis
