rs573491 chr1:109484269 T>G
- Sequence
ttcgcgcctccgggtcctagcgcc[T/G]gctcaccgctcgcagcccaccctg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) CD14+ monocytes iPS-derived dermal fibroblasts
- ASB for transcription factors
- STAT1_HUMAN CREB1_HUMAN RARA_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.68 | n/a | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.41 | -0.06 | 1.20 | n/a | No Hit | |||
| RARA_HUMAN | 0.03 | 1.91 | 1.08 | n/a | No Hit | |||
| GCR_HUMAN | 0.81 | 1.25 | 1.06 | n/a | No Hit | |||
| UBP7_HUMAN | 2.39 | -2.06 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood