rs5750404 chr22:37283665 G>T
- Sequence
cagaagggagaaaagaggccaagg[G/T]aggaaaacagcctctctaaggcag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) bipolar neuron IPSC-derived bipolar neuron GM23338
- ASB for transcription factors
- CTCF_HUMAN SMCA5_HUMAN STAG1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.43 | -0.17 | 1.83 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.72 | -2.39 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.77 | -0.77 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 1.66 | -0.23 | 1.67 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.49 | -0.07 | 1.50 | n/a | n/a |
Items per page:
1 – 5 of 5