rs575577 chr1:83999374 G>C
- Sequence
gaagacactgctcgagctttcccg[G/C]gccacacacaccccccccccgttt
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) MSC (mesenchymal stem cells)
- ASB for transcription factors
- E2F1_HUMAN ATF7_HUMAN ZN189_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | -0.09 | 1.83 | 1.42 | 7.15 | Concordant | |||
| ATF7_HUMAN | -0.03 | 1.85 | 1.67 | n/a | n/a | |||
| ZN189_HUMAN | n/a | 1.69 | 2.00 | n/a | n/a | |||
| RBM25_HUMAN | -0.14 | 1.83 | 1.00 | n/a | n/a | |||
| CHD1_HUMAN | -0.56 | 1.42 | 1.25 | n/a | n/a |
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Motif analysis
