rs57579264 chr14:77029071 C>T
- Sequence
ccgatccctgctccccaccccacc[C/T]ccaagcctcggcagtgaatttaaa
- ASB in cell types
- HEK293 (embryonic kidney) HUVEC-C (HUVEC, umbilical vein endothelial cells) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TF65_HUMAN ZBT17_HUMAN RAD21_HUMAN SP2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.37 | 0.38 | 3.00 | n/a | No Hit | |||
| ZBT17_HUMAN | -2.33 | 2.67 | 1.00 | -1.35 | Weak Discordant | |||
| RAD21_HUMAN | 0.01 | 2.21 | 1.00 | n/a | n/a | |||
| SP2_HUMAN | n/a | 2.30 | 1.00 | -1.97 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood