rs5760299 chr22:24270867 C>G
- Sequence
ggccgggcggcccggcaagcggcg[C/G]tgcggggtaggctgctttcctgag
- ASB in cell types
- esophagus squamous epithelium prostate gland pancreas WA09 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN TP53B_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.46 | 1.62 | 1.27 | -0.47 | Weak Concordant | |||
| TP53B_HUMAN | 2.76 | -2.50 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | -0.62 | 0.70 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood