rs5764397 chr22:43904487 T>G
- Sequence
gagtcttctctaaactcccccggg[T/G]aaagggagacccgctttcccggtc
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.15 | -0.07 | 1.33 | n/a | No Hit | |||
| STAG1_HUMAN | 0.99 | -0.22 | 1.56 | n/a | n/a |
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