rs5764398 chr22:43904593 C>T
- Sequence
cctggtaacaggcatcttcccaga[C/T]gctggcatcaccgctagaccaagg
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) adrenal gland LNCaP (prostate carcinoma) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.80 | -0.10 | 1.26 | n/a | No Hit | |||
| STAG1_HUMAN | 1.26 | -0.02 | 1.56 | n/a | n/a | |||
| RAD21_HUMAN | 1.38 | -1.03 | 1.08 | n/a | n/a |
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