rs5765169 chr22:45105586 C>G
- Sequence
gcccaagagtccaaatgtcagcat[C/G]cagcagctcagcagtggacagaca
- ASB in cell types
- MCF10A (breast epithelial cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- MNT_HUMAN TEAD4_HUMAN SIN3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 2.53 | -2.23 | 1.00 | n/a | n/a | |||
| TEAD4_HUMAN | 1.41 | -1.41 | 1.00 | n/a | No Hit | |||
| SIN3A_HUMAN | 2.63 | -2.67 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg