rs5768156 chr22:47918714 G>A
- Sequence
aagtcacacacgtgaaactcacac[G/A]ggaaaccacagcctctgcacctcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) NALM-6 (adult B acute lymphoblastic leukemia)
- ASB for transcription factors
- COT1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | n/a | 3.78 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | -2.45 | 2.64 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, bipolar disorder, fasting blood glucose, rheumatoid arthritis