rs58532407 chr1:44731029 T>C
- Sequence
cctcgcaacaaacacacaactttc[T/C]atctgatttttaaacaccgttgat
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney)
- ASB for transcription factors
- BRD4_HUMAN RFOX2_HUMAN SMAD5_HUMAN MED26_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.47 | 0.52 | 1.30 | n/a | n/a | |||
| RFOX2_HUMAN | 3.40 | -3.60 | 1.17 | n/a | n/a | |||
| SMAD5_HUMAN | 2.39 | -2.11 | 1.50 | n/a | n/a | |||
| MED26_HUMAN | 2.19 | -1.90 | 1.00 | n/a | n/a | |||
| SIN3A_HUMAN | 2.76 | -1.98 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid