rs58692840 chr17:43917664 T>C
- Sequence
cgtttgggatggttgattaggact[T/C]gttgctgtggcggtagctcaccaa
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) bipolar neuron GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.14 | 0.22 | 1.56 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Sigmoid, Skin_Sun_Exposed_Lower_leg