rs58805176 chr12:112418839 G>A
- Sequence
gccgtcgctcggtcctccgctgac[G/A]ggaagcaggaagtggcggcgggcg
- ASB in cell types
- adult erythroblasts CD34+ hematopoietic stem cells MDA-MB-231 (breast adenocarcinoma) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- BRD4_HUMAN TIF1B_HUMAN HCFC1_HUMAN ETS1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 0.55 | 1.33 | 1.19 | n/a | n/a | |||
| TIF1B_HUMAN | 3.23 | n/a | 2.00 | n/a | n/a | |||
| HCFC1_HUMAN | 1.70 | 0.45 | 2.50 | n/a | n/a | |||
| ETS1_HUMAN | 0.15 | 2.69 | 1.11 | 3.55 | Concordant | |||
| CATA_HUMAN | n/a | 2.40 | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood