rs58958115 chr6:28863758 A>G
- Sequence
ctctaccactgagctacacccccc[A/G]acgctcaacgtgggccaaaatatt
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- ZNF24_HUMAN ANDR_HUMAN STAT1_HUMAN SUMO2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | 1.39 | -3.19 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 3.02 | -4.69 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.96 | -0.36 | 1.67 | n/a | No Hit | |||
| SUMO2_HUMAN | 1.82 | n/a | 4.00 | n/a | n/a | |||
| MBL2_HUMAN | 1.47 | n/a | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood