rs592865 chr1:201503826 C>G
- Sequence
tgctagctctctctttctcaagca[C/G]gctcttttccaggcttgttttctt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HeLa S3 (cervical adenocarcinoma) sigmoid colon 22RV1 (prostate carcinoma)
- ASB for transcription factors
- EP300_HUMAN NDF1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 1.34 | 0.25 | 1.17 | n/a | n/a | |||
| NDF1_HUMAN | -1.94 | 2.72 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.40 | -1.31 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Thyroid, Whole_Blood