rs5930688 chrX:135315998 C>T

Sequence
ttttctggttattttgtataatct[C/T]tgttcctttttttcccttatcgtt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ATF7_HUMAN IKZF2_HUMAN MEF2B_HUMAN ZNF24_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF7_HUMAN 3.38 n/a 8.0·10-41.00 2.00 n/a n/a
IKZF2_HUMAN 3.02 n/a 3.9·10-31.00 3.00 n/a n/a
MEF2B_HUMAN 2.59 n/a 8.1·10-31.00 3.00 n/a No Hit
ZNF24_HUMAN 2.89 -5.22 0.041.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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