rs59365368 chr12:52214721 C>T
- Sequence
catggaggccacgctagccccacc[C/T]gctggctgagagagggttgcaggg
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line) pancreas
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.85 | 3.39 | 2.19 | 3.53 | Concordant | |||
| RAD21_HUMAN | n/a | 3.37 | 1.75 | n/a | n/a | |||
| STAG1_HUMAN | n/a | 2.76 | 1.00 | n/a | n/a |
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Motif analysis
