rs5944956 chrX:101803644 A>G
- Sequence
aaaattgaaattgaaagtcaatca[A/G]tgccatctgttgacccaatctaga
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) LUHMES (lund human mesencephalic cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN PRDM1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.12 | 2.45 | 2.02 | 2.83 | Concordant | |||
| STAG1_HUMAN | 0.36 | 2.79 | 2.12 | n/a | n/a | |||
| RAD21_HUMAN | -1.02 | 1.89 | 2.00 | n/a | n/a | |||
| PRDM1_HUMAN | n/a | 2.94 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid