rs594597 chr19:48875260 A>G
- Sequence
cccagattcttgagtcttagaaag[A/G]aagggggctgggggccgagacttc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) CAR-T cells MDM(monocyte derived macrophages)
- ASB for transcription factors
- IRF4_HUMAN JUN_HUMAN SPI1_HUMAN TYY2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF4_HUMAN | -0.34 | 2.95 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.54 | 1.76 | 1.90 | n/a | No Hit | |||
| SPI1_HUMAN | -0.93 | 2.38 | 2.17 | 3.82 | Concordant | |||
| TYY2_HUMAN | n/a | 3.42 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | -0.96 | 1.17 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood