rs594600 chr19:48875257 A>G
- Sequence
gagcccagattcttgagtcttaga[A/G]agaaagggggctgggggccgagac
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) CAR-T cells macrophages
- ASB for transcription factors
- IRF4_HUMAN JUN_HUMAN STAG1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF4_HUMAN | -0.49 | 2.78 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.23 | 1.76 | 1.91 | n/a | No Hit | |||
| STAG1_HUMAN | 0.22 | 1.16 | 1.07 | n/a | n/a | |||
| IKZF2_HUMAN | -0.68 | 1.32 | 1.00 | n/a | n/a | |||
| CEBPB_HUMAN | 2.12 | 0.49 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood