rs5953146 chrX:48026897 A>G
- Sequence
tggcgccctctagaggatgacgcg[A/G]cacaataccaccatgagagagtga
- ASB in cell types
- erythroid progenitors CD14+ monocytes GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAT1_HUMAN CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.48 | n/a | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 2.06 | n/a | 5.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.25 | n/a | 6.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood