rs5963986 chrX:41442419 C>T
- Sequence
ctcgccccggaggctccgcccctt[C/T]tccccagggtggggccggggtggt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) ID00014 (lymphoblastoid cell, DiGeorge syndrome) WA09 (embryonic stem cells) neutrophils from periferal blood
- ASB for transcription factors
- RAD21_HUMAN IKZF2_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.98 | 1.75 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.84 | -0.85 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | -1.50 | 1.86 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg, Whole_Blood