rs598371 chr1:15886244 G>A
- Sequence
gctgaagtgggaaccttgctttta[G/A]ttaggatgctcgactgcagaggaa
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- GCR_HUMAN MCM2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.61 | 1.93 | 1.00 | n/a | No Hit | |||
| MCM2_HUMAN | -0.68 | 2.47 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, arthritis including non-rheumatoid, bipolar disorder, clcnka cis-gene expression in monocytes-derived macrophages, diastolic blood pressure (dbp), hdl cholesterol, hspb7 cis-gene expression in monocytes-derived macrophages, longstanding arthritis, spen cis-gene expression in monocytes-derived macrophages, tetrology of fallot, total cholesterol, zbtb17 cis-gene expression in monocytes-derived macrophages
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid