rs5992955 chr22:18001439 G>C
- Sequence
cctcggcgccggcgtcgctgtggc[G/C]ggccagtgccgccctgttccgcag
- ASB in cell types
- K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) GM19239 (male B-cells lymphoblastoid cell line) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- SPT5H_HUMAN REST_HUMAN TIF1B_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 2.03 | 0.62 | 1.00 | n/a | n/a | |||
| REST_HUMAN | -0.16 | 1.82 | 2.50 | n/a | No Hit | |||
| TIF1B_HUMAN | -0.41 | 1.66 | 1.33 | n/a | n/a | |||
| SMCA4_HUMAN | 0.18 | 1.16 | 1.28 | n/a | n/a | |||
| ATF7_HUMAN | -1.21 | 1.21 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood