rs5992956 chr22:18001741 T>C
- Sequence
cgcccttcgtcctctccgtccccc[T/C]gcaggatccatatggtacattcct
- ASB in cell types
- gastroesophageal sphincter tibial nerve upper lobe of left lung Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.22 | 0.02 | 1.37 | -2.08 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood