rs5992957 chr22:18001877 C>A
- Sequence
ccggtgggcatatcaaagcctgcc[C/A]ccggagagaagagaggatgtattt
- ASB in cell types
- K562 (myelogenous leukemia) esophagus muscularis mucosa
- ASB for transcription factors
- PKNX1_HUMAN CTCF_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | n/a | 1.69 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.26 | 0.14 | 1.29 | 3.37 | Discordant | |||
| KDM1A_HUMAN | -0.27 | 1.27 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood