ADASTRA v5.1.3
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rs5992958
chr22:18001878
C
>
G
Sequence
cggtgggcatatcaaagcctgccc[C/G]cggagagaagagaggatgtattta
ASB in cell types
K562 (myelogenous leukemia)
esophagus muscularis mucosa
gastroesophageal sphincter
ASB for transcription factors
PKNX1_HUMAN
CTCF_HUMAN
KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN
n/a
1.73
1.00
6.9·10
-11
2.00
n/a
No Hit
CTCF_HUMAN
1.29
0.05
6.1·10
-7
1.00
1.29
n/a
No Hit
KDM1A_HUMAN
-0.35
1.22
1.00
0.04
1.00
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL
Cells_Cultured_fibroblasts
,
Lung
,
Pancreas
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)