rs5995300 chr22:36529551 A>G
- Sequence
ccgcctgttctacctgcctgctta[A/G]tgtgaaactcagcgcaggggaggt
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- STAT1_HUMAN ZN366_HUMAN ZNF18_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.03 | 0.22 | 1.67 | n/a | No Hit | |||
| ZN366_HUMAN | -2.21 | 3.00 | 2.00 | n/a | n/a | |||
| ZNF18_HUMAN | -2.00 | 2.94 | 2.00 | 4.29 | Concordant | |||
| IKZF2_HUMAN | 1.44 | -1.02 | 1.00 | n/a | n/a | |||
| CREB1_HUMAN | 1.31 | -0.01 | 1.08 | n/a | No Hit |
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Motif analysis
