rs5995473 chr22:37592637 G>A
- Sequence
agctcactgcaacttccgcctccc[G/A]gttcaagccattctcctgtctcaa
- ASB in cell types
- HEK293 (embryonic kidney) HCT-116 (colon carcinoma) hTERT-HME1(Telomerase immortalized cell line) neural cell
- ASB for transcription factors
- Z518A_HUMAN BRCA2_HUMAN PRD10_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| Z518A_HUMAN | 2.75 | n/a | 2.00 | n/a | n/a | |||
| BRCA2_HUMAN | 2.37 | -2.02 | 1.00 | n/a | n/a | |||
| PRD10_HUMAN | 1.03 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Nerve_Tibial, Thyroid, Whole_Blood