rs6000662 chr22:37317190 G>A
- Sequence
ccggagtagagccctggcctggac[G/A]tcctaaagggggagacatctggtc
- ASB in cell types
- HCT-116 (colon carcinoma) foreskin keratinocyte MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.74 | 0.48 | 1.33 | -1.00 | Weak Concordant | |||
| ZFX_HUMAN | -1.56 | 1.98 | 1.00 | n/a | No Hit |
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Motif analysis
