rs6003006 chr22:43033820 C>T
- Sequence
tgggcaacagagcaagactccgtc[C/T]caaaaaaacaaaaagttctgattt
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM19240 (B cells Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.54 | -0.11 | 1.73 | n/a | No Hit | |||
| STAG1_HUMAN | 1.04 | -1.51 | 1.28 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg