rs6003117 chr22:43231149 G>A
- Sequence
cctaaacctcctcaggccggcagc[G/A]ccatctcctgggtgggtttacctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi) GM12892 (female B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.72 | 0.36 | 1.31 | -3.57 | Concordant | |||
| STAG1_HUMAN | 3.36 | -1.39 | 1.22 | n/a | n/a |
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Motif analysis
