rs6004587 chr22:25333849 G>C
- Sequence
aggtttggaatcttcagtgtcaaa[G/C]tctgtgttgtgtcttcccacaggg
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.97 | -0.94 | 1.17 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP recurrent early onset major depressive disorder, recurrent early onset major depressive disorder (males)