rs6005121 chr22:26669154 A>G
- Sequence
tgcaattccagctccctccagagg[A/G]gacagtcccagcgtttgcaagaga
- ASB in cell types
- foreskin keratinocyte GM10847 (female B-cells Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) pancreas
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.30 | 2.14 | 1.54 | 2.45 | Concordant | |||
| STAG1_HUMAN | n/a | 2.79 | 1.33 | n/a | n/a |
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Motif analysis
