rs6006405 chr22:30224638 A>G

Sequence
cacagcctcaggagagccactgtc[A/G]caaggccggagctctgaaaagact
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) BEAS-2B (bronchial epithelium)
ASB for transcription factors
SPI1_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.71 0.11 7.9·10-31.00 1.17 n/a No Hit
GCR_HUMAN 0.89 -0.27 0.031.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  homa-b,  schizophrenia,  serum creatinine,  simpson-angus scale
GTEx eQTL Artery_Aorta,  Brain_Spinal_cord_cervical_c-1,  Esophagus_Mucosa,  Testis

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